philentropy - Similarity and Distance Quantification Between Probability Functions
Computes 46 optimized distance and similarity measures for comparing probability functions (Drost (2018) <doi:10.21105/joss.00765>). These comparisons between probability functions have their foundations in a broad range of scientific disciplines from mathematics to ecology. The aim of this package is to provide a core framework for clustering, classification, statistical inference, goodness-of-fit, non-parametric statistics, information theory, and machine learning tasks that are based on comparing univariate or multivariate probability functions.
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distance-measuresdistance-quantificationinformation-theoryjensen-shannon-divergenceparametric-distributionssimilarity-measuresstatisticscpp
12.91 score 151 stars 23 dependents 566 scripts 7.2k downloads
myTAI - Evolutionary Transcriptomics
Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.
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biological-processesconservationevo-devoevolutionevolutionary-transcriptomicsexpression-profilesgene-expressiongene-setsmytaistudies-transcriptomestranscriptomecpp
10.05 score 48 stars 94 scripts 254 downloads